Cis-acting element prediction

Author: nxag

August undefined, 2024

WebMay 4, 2024 · The cis-acting regulatory elements were searched for further studying the underlying molecular mechanisms of SmGATAs in response to various stresses. The types and numbers of cis-acting regulatory elements varied in SmGATA genes ( Supplementary Materials 4: Table S4 ), and the core CAAT box and TATA box account for a relatively … WebOct 7, 2024 · Cis-acting element prediction results showed that the two gene families had similar responses to hormones and had the most responsive elements responsive to ABA followed by ethylene responsive.

Genome-wide identification and expression pattern analysis of

WebMay 27, 2024 · Cis-acting elements prediction. Analysis of cis-acting elements in the VvWRKYs promoters provided the basis for the understanding of potential regulation … WebPLACE is a database of motifs found in plant cis-acting regulatory DNA elements, which were collected from previously published reports. It originally covered vascular plants … foam switch case

Identification and validation of promoters and cis-acting …

WebIn silico analysis of the rare variants and identification of cis-acting elements was determined using Human Splicing Finder (HSF), ESE finder, RESCUE-ESE and through … WebCis-regulatory elements (CREs) ... Other programs created for the identification and prediction of cis-regulatory modules include: ... An example of a cis-acting regulatory sequence is the operator in the lac operon. This DNA sequence is bound by the lac repressor, which, in turn, prevents transcription of the adjacent genes on the same DNA ... WebDatabase of motifs found in plant cis-acting regulatory DNA elements, all from previously published reports. It covers vascular plants only. Place contains a useful signal scan … greenworks cordless snow blower review

PRECISE: software for prediction of cis-acting regulatory elements

WebAdditionally, cis-acting elements related to hormone, abiotic stress and light were found in the promoter region of JmjC genes. Several JmjC genes were regulated under abscisic acid (ABA) and methyl jasmonate (MeJA) ... cis-acting element prediction of JmjC gene promoter in moso bamboo. The 2 kb sequences upstream of the start codon ... WebThe cis-acting element CCAAT-box that NF-YC2 may bind to was mainly distributed at the −1495 bp promoter (Table 1). When the length of the ZmC4 NADP-ME promoter was … greenworks corporate headquartersWebApr 7, 2024 · The results of the prediction and analysis of the BrPAL promoter’s cis-acting elements indicate that BrPAL may respond to light, abiotic stress, and different hormones. Based on the UVA, FR, high-temperature, low-temperature, drought, salt stress, IAA, ABA, and MeJA treatments of PAL family genes, qRT-PCR expression analysis of purple leaf ... foam switch

"WebSubmitting a sequence to a program which will look for transcription sites known by PlantCARE. PlantCARE, a database of plant cis-acting regulatory elements and a … " - Cis-acting element prediction

Cis-acting element prediction

Genome-wide identification of the geranylgeranyl pyrophosphate …

WebMay 6, 2005 · Search for documented motifs found in plant cis-acting regulatory DNA elements. Highlights: As of 2003, over 380 motifs and their variants were extracted … WebJan 21, 2024 · Cis-acting element prediction showed that PvCML contained elements related to growth and development, response to abiotic stress and hormones. Moreover, the majority of PvCMLs showed different ...

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WebJun 22, 2024 · Additionally, cis-acting element prediction shows that all BnaDELLA genes contain light, stress, and hormone-responsive elements on their promoters. The gene ontology (GO) enrichment report indicated that the BnaDELLA gene family might regulate stress responses. Combine with transcriptomic data used in this study, we detected the … WebCis-regulatory elements are often binding sites for one or more trans-acting factors. To summarize, cis-regulatory elements are present on the same molecule of DNA as the …

WebIdentification of cis- and trans-elements of input gene. 2. Construction of gene regulatory networks by using coexpression analysis. 3. Visualization of experimental regulatory factor binding sites in JBrowse. ... Additionally, this new version increased 2,449 matrices … Features: PlantPAN 2.0: PlantPAN (old) AtPAN: NewPLACE: AGRIS: JASPAR: … If your resolution is not 1680 x 1050, you can resize your web page for optimal … WebPrediction of cis-element with experimantally varidated examples. To estimate gene regulatory schemes, cis-elements in regions 200-bp upstream of TSS were predicted by …

WebThe 1972 bp promoter sequence of VqMYB15 was submitted to PlantCARE for element prediction analysis. Citation 24 The results showed that the promoter sequence contained a large number of stress-response elements. ... There are some cis-acting elements that are associated with light in the promoter regions of genes. For example, it is known that ... WebThese are several methods for comprehensive cis element prediction. For example, Searching the genome using experimentally reported cis elements. (e.g. AGRIS and …

WebApr 7, 2024 · The prediction results of the cis-acting regulatory elements in the promoter region show that all BvSUTs contain light-responsive elements. Among them, the promoter regions of BvSUT2 , BvSUT4 and BvSUT8 have predicted binding sites of AT-rich DNA binding proteins (ATBP-1) ( Figure 5 ).

WebWe present a computational pipeline to predict cis-regulatory elements composing results based on different algorithms: Clover, Cluster-Buster, an own implementation of human/rat/mouse sequence identity and our ITB algorithm. The procedure uses information from the human genome sequence, NCBI gene annotations, verified eukaryotic … greenworks cordless trimmer \u0026 leaf blower kitWebAug 31, 2005 · In this article, a simple and fast method for identifying regulatory cis-acting elements is described. A new and versatile software program named PRECISE … foam swimsuit cups largeWebMar 1, 2014 · Use of cis-acting regulatory elements in synthetic promoters is highlighted. • A new approach of developing and using synthetic introns in promoters is presented. • … foam sword blue pirateWebDec 23, 2024 · First, we have proposed an economical and efficient calculation method to predict a subclass of auxin response genes that combined the methods in recent similar … foam sword godricWebDec 28, 2014 · 27. Distal regulatory elements. 28. Enhancers enhancer is a short (50-1500 bp) region of DNA that can be bound with proteins (activators) to activate transcription of a gene or genes. These proteins are usually referred to as transcription factors. 29. Enhancers Enhancers were characterised almost 20 years ago. foam sword fighting gifWebA cis -acting element for the sulfur response is reported for the Arabidopsis SULTR1;1 sulfate transporter gene ( Maruyama-Nakashita et al., 2005 ). The sulfur-responsive … foam sword ice gotWebAug 26, 2024 · PIN-formed (PIN) proteins are important auxin carriers that participate in the polar distribution of auxin in plants. In this study, 16 ZaPIN genes were identified from the whole genome of Zanthoxylum armatum DC. The physicochemical properties and structure of PIN proteins were determined, and the gene sequences and promoter regions were … greenworks cordless tools