The pairwise homoplasy index

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Webb14 juni 2024 · Intra and inter-continental migration was predicted between Europe and South America, likely associated with the movement of contaminated germplasm. Low … Webb4 apr. 2024 · Pairwise values of both indices were low or moderately high, ranging from 0 to 0.163 (F ST). Many comparisons were statistically significant even after correction for multiple testing, mainly those involving Lev and Nor. Low and not significant values for comparisons, especially involving Sardinian samples, highlighted the lack of significant …

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WebbPage topic: "Genetic Diversity, Heteroplasmy, and Recombination in Mitochondrial Genomes of Daphnia pulex, Daphnia pulicaria, and Daphnia obtusa - Oxford Academic". Created by: Leroy Patterson. Language: english. Webb25 jan. 2024 · Indeed, the pairwise homoplasy index (PHI) test for recombination was highly significant ( p value <0.001) when we performed split-decomposition network analysis using Split tree (Huson 1998 ). This indicates conflicting phylogenetic signals that are possibly attributed to recombination among viral genomes. philippines identity and heritage

Pairwise Homoplasies - Evolutionary Biology - Hearts in Healthcare

Webb9 okt. 2024 · A pairwise homoplasy index (PHI or Φw) below 0.05 provide evidence for the presence of significant recombination within a dataset. According to the GCPSR analysis, our dataset showed PHI of 1.0, indicating no significant genetic recombination between C. vitis and its sister taxa, C. diplodiella and C. diplodiopsis ( Fig. 3 ). Webb26 okt. 2016 · Pairwise homoplasy index (PHI) test. C. camelliae). No significant recombination events were observed between C. wuxiense and phylogenetically related … trump\u0027s luck may finally be running out

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Webb1 jan. 2005 · Recombination tests based on the pairwise homoplasy index (PHI, Bruen, et al. 2006), Max χ 2 (Maynard Smith and Smith 1992), and … WebbConsistency Index (CI) minimum number of changes divided by the number required on the tree. CI=1 if there is no homoplasy negatively correlated with the number of species sampled. Retention Index (RI) RI = MaxSteps ObsSteps ... Convert the raw data (sequences) to a pairwise distances Try to nd a tree that explains these distances. philippines ifrsWebb5 feb. 2016 · Using the alignment of the concatenated genes of each of the five clusters in the second data set as input, we also ran the Pairwise Homoplasy Index (PHI) test for recombination implemented in ... philippines immigration appointment online

"Webb3 sep. 2013 · Results of the Pairwise Homoplasy Index (PHI) test (Table J in Supplementary Tables S1) showed that no recombination occurred within each locus across all Asian populations, however two recombination events were observed among concatenated sequences of isolates from East and South/Southeast Asia. " - The pairwise homoplasy index

The pairwise homoplasy index

Persoonia (2015) 35, 63-86 - Pestinfo-Wiki

WebbMorphological studies and multi-locus phylogenetic analyses with the concatenated sequences of internal transcribed spacer (ITS), glyceraldehyde-3-phosphate dehydrogenase (GAPDH), chitin synthase (CHS-1), actin (ACT), beta-tubulin (TUB2), calmodulin (CAL), and the intergenic region between Apn2 and Mat1-2-1 (ApMat) as well … http://www.infogalactic.com/info/Distance_matrices_in_phylogeny

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WebbPathogenicity tests and the pairwise homoplasy index test suggest that C. jiangxiense and C. kahawae subsp. kahawae are two independent species. This study represents the first report of C. alienum and C. cliviae occurring on Camellia sinensis. WebbTwo other measures of homoplasy may be calculated: the retention index (RI) and the rescaled consistency index (RC). The retention index is calculated as the ratio ( g – s )/( …

Webb9 dec. 2024 · Consistency index (ci), retention index (ri), rescaled consistency index (rc) and homoplasy index (hi) are presented for each “character” (taxon); Table S4: Apomorphy list for Figure 2. A double-lined arrow means that the change occurs in all possible reconstructions (i.e., is unambiguous); characters with such changes are uniquely … Webb30 jan. 2015 · The pairwise homoplasy index (PHI) was implemented in SplitsTree to test for significant recombination among the isolates. ClonalFrame v1.1 was used to estimate the relative contribution of recombination and mutation in generating polymorphisms among the 45 Bartonella STs.

Webb1 juli 2024 · Moreover, the pairwise homoplasy index test and the comparison of morphological and ecological characters, have strengthened the fact that reproductive isolation and geographical or host plant barriers to gene flow are absent. This study has also demonstrated that the identification of species in Diaporthe might . Declaration of … WebbThe offspring displayed clear evidence of recombination on a genetic level as shown in the variations observed between banding patterns in the amplified fragment length polymorphism. Also a net-like and reticulated NeighborNet was observed and the pairwise homoplasy index test for recombination supported the presence of recombination (P = 0

Webb14 feb. 2024 · Morphological studies and multilocus phylogenetic analyses with the concatenated sequences of the internal transcribed spacer, glyceraldehyde-3-phosphate dehydrogenase, chitin synthase, actin, beta-tubulin, calmodulin, and the intergenic region between Apn2 and Mat1-2-1, as well as a pairwise homoplasy index, test placed the …

WebbThe pairwise homoplasy index (PHI) is a model test based on the fact that multiple gene phylogenies will be concordant between species and discordant due to recombination and mutations within a species. The data were analyzed by the pairwise homoplasy index (PHI) test . The test was performed in SplitsTree4 [55,56] as described by Quaedvlieg philippines iedWebb19 aug. 2024 · Pairwise homoplasy index (PHI) test of Fusarium rosicola and closely related F. breve using both LogDet transformation and splits decomposition. PHI test … philippines image id robloxWebb15 sep. 2024 · A more extreme problem of interpretation of pairwise homoplasies arises in some methods for analyzing electrophoretic data. Suppose that each of three terminal taxa A, B, and C is fixed for a different allele at some locus, and that these taxa are related through an unresolved tree with common ancestor X. philippine sim card for iphoneWebbMolecular Evolutionary Analysis of Potato Virus Y Infecting Potato Based on the VPg Gene. 杂志Frontiers in Microbiology，IF：5.640/Q1. 摘要：马铃薯Y病毒（PVY）是一种重要的植物病原体，感染茄科作物，对全球马铃薯和烟草生产造成重大损失。PVY的植物病理学和分子生物学的某些方面已得到深入研究，但对该病毒的进化动力学 ... philippine side dishesWebb1 juni 2024 · Recombination within FOSC was tested using the pairwise homoplasy index and divergence ages were estimated by molecular dating. We called SNPs from assembled genomes using a k-mer approach and tested for significant linkage disequilibrium as an indication of PCE. philippines id systemWebb2013; Chan et al. 2013). Index Fungorum (www.indexfungorum.org) has listed 126 names under this genus. In China, taxonomic research on Amauroderma began with Teng, who recorded 10 species (Teng 1936, 1939, 1963). Later Zhao et al. (1979, 1983, 1984) and Zhao & Zhang (1986, 1987a,b, 2000) reported 20 species, nine of which were new. philippines images freeWebb9 maj 2024 · pairwise homoplasy index RAD-Seq restriction site-associated DNA sequencing pairwise homoplasy index SNPs single-nucleotide polymorphisms WGS whole-genome sequencing. Copyright The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. trump\u0027s lowest approval rating gallup